Plant Physiology

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Chapter 7 References

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Introduction

Blankenship, R. E. (2014) Molecular Mechanisms of Photosynthesis, 2nd ed. Wiley-Blackwell, Oxford.

Photosynthesis in Higher Plants

General Concepts

Key Experiments in Understanding Photosynthesis

Blankenship, R. E., Tiede, D. M., Barber, J., Brudvig, G. W., Fleming, G., Ghirardi, M., Gunner, M. R., Junge, W., Kramer, D. M., Melis, A., et al. (2011) Comparing photosynthetic and photovoltaic efficiencies and recognizing the potential for improvement. Science 332: 805–809.

Zhu, X.-G., Long, S. P. and Ort, D. R. (2010) Improving photosynthetic efficiency for greater yield. Ann. Rev. Plant Biol. 61: 235–261.

Organization of the Photosynthetic Apparatus

Allen, J. F., and Forsberg, J. (2001) Molecular recognition in thylakoid structure and function. Trends Plant Sci. 6: 317–326.

Becker, W. M. (1986) The World of the Cell. Benjamin/Cummings, Menlo Park, CA.

Deisenhofer, J., and Michel, H. (1989) The photosynthetic reaction center from the purple bacterium Rhodopseudomonas viridis. Science 245: 1463–1473.

Nelson, N., and Ben-Shem, A. (2004) The complex architecture of oxygenic photosynthesis. Nat. Rev. Mol. Cell Biol. 5: 971–982.

Organization of Light-Absorbing Antenna Systems

Barros, T., and Kühlbrandt, W. (2009) Crystallisation, structure and function of plant light-harvesting Complex II. Biochim. Biophys. Acta 1787: 753–772.

Ben-Shem, A., Frolow, F., and Nelson, N. (2003) Crystal structure of plant photosystem I. Nature 426: 630–635.

Green, B. R., and Durnford, D. G. (1996) The chlorophyll-carotenoid proteins of oxygenic photosynthesis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 685–714.

Green, B. R., and Parson, W. W., eds. (2003) Light-Harvesting Antennas in Photosynthesis. Kluwer Academic Publishers, Dordrecht, Netherlands.

Grossman, A. R., Bhaya, D., Apt, K. E., and Kehoe, D. M. (1995) Light-harvesting complexes in oxygenic photosynthesis: diversity, control, and evolution. Annu. Rev. Genet. 29: 231–288.

Liu, Z. F., Yan, H. C., Wang, K. B., Kuang, T. Y., Zhang, J. P., Gui, L. L., An, X. M., and Chang, W. R. (2004) Crystal structure of spinach major light harvesting complex at 2.72 Å resolution. Nature 428: 287–292.

Pullerits, T., and Sundström, V. (1996) Photosynthetic light-harvesting pigment-protein complexes: toward understanding how and why. Acc. Chem. Res. 29: 381–389.

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Mechanisms of Electron Transport

Amunts, A., and Nelson, N. (2009) Plant photosystem I design in the light of evolution. Structure 17: 637–650.

Baniulis, D., Yamashita, E., Zhang, H., Hasan, S. S., and Cramer, W. A. (2008) Structure–function of the cytochrome b6f complex. Photochem. Photobiol. 84: 1349–1358.

Barber, J., Nield, N., Morris, E. P., and Hankamer, B. (1999) Subunit positioning in photosystem II revisited. Trends Biochem. Sci. 24: 43–45.

Ben-Shem, A., Frolow, F., and Nelson, N. (2003) Crystal structure of plant photosystem I. Nature 426: 630–635.

Blankenship, R. E., and Prince, R. C. (1985) Excited-state redox potentials and the Z scheme of photosynthesis. Trends Biochem. Sci. 10: 382–383.

Brudvig, G. W. (2008) Water oxidation chemistry of photosystem II. Philos. Trans. R. Soc. Lond., B, Biol. Sci. 363: 1211–1219.

Buchanan, B. B., Gruissem, W., and Jones, R. L., eds. (2000) Biochemistry and Molecular Biology of Plants. American Society of Plant Physiologists, Rockville, MD.

Ferreira, K. N., Iverson, T. M., Maghlaoui, K., Barber, J., and Iwata, S. (2004) Architecture of the photosynthetic oxygen-evolving center. Science 303: 1831–1838.

Jordan, P., Fromme, P., Witt, H. T., Klukas, O., Saenger, W., and Krauss, N. (2001) Three-dimensional structure of cyanobacterial photosystem I at 2.5 Å resolution. Nature 411: 909–917.

Karplus, P. A., Daniels, M. J., and Herriott, J. R. (1991) Atomic structure of ferredoxin-NADP+ reductase: prototype for a structurally novel flavoenzyme family. Science 251: 60–66.

Kurisu, G., Zhang, H. M., Smith, J. L., and Cramer, W. A. (2003) Structure of cytochrome b6f complex of oxygenic photosynthesis: tuning the cavity. Science 302: 1009–1014.

Nelson, N., and Ben-Shem, A. (2004) The complex architecture of oxygenic photosynthesis. Nat. Rev. Mol. Cell Biol. 5: 971–982.

Okamura, M. Y., Paddock, M. L., Graige, M. S., and Feher, G. (2000) Proton and electron transfer in bacterial reaction centers. Biochim. Biophys. Acta 1458: 148–163.

Stroebel, D., Choquet, Y., Popot, J. L., and Picot, D. (2003) An atypical heme in the cytochrome b6f complex. Nature 426: 413–418.

Umena, Y., Kawakami, K., Shen, J.-R., and Kamiya, N. (2011) Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å. Nature 473: 55–60.

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Proton Transport and ATP Synthesis in the Chloroplast

Boyer, P. D. (1997) The ATP synthase: a splendid molecular machine. Annu. Rev. Biochem. 66: 717–749.

Jagendorf, A. T. (1967) Acid-based transitions and phosphorylation by chloroplasts. Fed. Proc. Am. Soc. Exp. Biol. 26: 1361–1369.

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Repair and Regulation of the Photosynthetic Machinery

Allen, J. F., and Forsberg, J. (2001) Molecular recognition in thylakoid structure and function. Trends Plant Sci. 6: 317–326.

Asada, K. (1999) The water–water cycle in chloroplasts: scavenging of active oxygens and dissipation of excess photons. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50: 601–639.

Baker, N. R. (2008) Chlorophyll fluorescence: a probe of photosynthesis in vivo. Annu. Rev. Plant Biol. 59: 89–113

Demmig-Adams, B., and Adams, W. W., III. (1992) Photoprotection and other responses of plants to high light stress. Annu. Rev. Plant Physiol. Plant Mol. Biol. 43: 599–626.

Finazzi, G. (2005) The central role of the green alga Chlamydomonas reinhardtii in revealing the mechanism of state transitions. J. Exp. Bot. 56: 383–388.

Haldrup, A., Jensen, P. E., Lunde, C., and Scheller, H. V. (2001) Balance of power: a view of the mechanism of photosynthetic state transitions. Trends Plant Sci. 6: 301–305.

Holt, N. E., Zigmantas, D., Valkunas, L., Li, X. P., Niyogi, K. K., and Fleming, G. R. (2005) Carotenoid cation formation and the regulation of photosynthetic light harvesting. Science 307: 433–436.

Horton, P., and Ruban, A. (2004) Molecular design of the photosystem II light harvesting antenna: photosynthesis and photoprotection. J. Exp. Bot. 56: 365–373.

Johnson, M. P., and Ruban, A. V. (2009) Photoprotective energy dissipation in higher plants involves alteration of the excited state energy of the emitting chlorophyll(s) in the light harvesting antenna II (LHCII). J. Biol. Chem. 284: 23592–23601.

Krause, G. H., and Weis, E. (1991) Chlorophyll fluorescence and photosynthesis: the basics. Annu. Rev. Plant Physiol. Plant Mol. Biol. 42: 313–350.

Li, X. P., Björkman, O., Shih, C., Grossman, A. R., Rosenquist, M., Jansson, S., and Niyogi, K. K. (2000) A pigment-binding protein essential for regulation of photosynthetic light harvesting. Nature 403: 391–395.

Li, Z., Wakao, S., Fischer, B. B., and Niyogi, K. K. (2009) Sensing and responding to excess light. Annu. Rev. Plant Biol. 60: 239–260.

Long, S. P., Humphries, S., and Falkowski, P. G. (1994) Photoinhibition of photosynthesis in nature. Annu. Rev. Plant Physiol. Plant Mol. Biol. 45: 633–662.

Melis, A. (1999) Photosystem-II damage and repair cycle in chloroplasts: what modulates the rate of photodamage in vivo? Trends Plant Sci. 4: 130–135.

Tikkanen, M., Grieco, M., Nurmi, M., Rantala, M., Suorsa, M., and Aro, E.-M. (2012) Regulation of the photosynthetic apparatus under fluctuating growth light. Philos. Trans. R. Soc. Lond., B,  Biol. Sci. 367: 3486–3493.

Genetics, Assembly, and Evolution of Photosynthetic Systems

Allen, J. F. (2005) A redox switch hypothesis for the origin of two light reactions in photosynthesis. FEBS Lett. 579: 963–968.

Beale, S. I. (1999) Enzymes of chlorophyll biosynthesis. Photosyn. Res. 60: 43–73.

Blankenship, R. E., and Hartman, H. (1998) The origin and evolution of oxygenic photosynthesis. Trends Biochem. Sci. 23: 94–97.

Cavalier-Smith, T. (2000) Membrane heredity and early chloroplast evolution. Trends Plant Sci. 5: 174–182.

Celedon, J. M. and Cline, K. (2013) Intra-plastid protein trafficking: how plant cells adapted prokaryotic mechanisms to the eukaryotic condition. Biochim. Biophys. Acta 1833: 341–351.

Chi, W., Sun, X., and Zhang, L. (2013) Intracellular signaling from plastid to nucleus. Annu. Rev. Plant Biol. 64: 559–582.

Eberhard, S., Finazzi, G., and Wollman, F. A. (2008) The dynamics of photosynthesis. Annu. Rev. Genet. 17: 463–515.

Eckhardt, U., Grimm, B. and Hortensteiner, S. (2004) Recent advances in chlorophyll biosynthesis and breakdown in higher plants. Photosyn. Res. 56: 1–14.

Hohmann-Marriott, M. F. and Blankenship, R. E. (2011) Evolution of photosynthesis. Annu. Rev. Plant Biol. 62: 515–548.

Palmer, J. D., and Delwiche, C. F. (1996) Second-hand chloroplasts and the case of the disappearing nucleus. Proc. Natl. Acad. Sci. USA 93: 7432–7435.

Takamiya, K.-I., Tsuchiya, T., and Ohta, H. (2000) Degradation pathway(s) of chlorophyll: What has gene cloning revealed? Trends Plant Sci. 5: 426–431.

Tanaka, R., and Tanaka, A. (2007) Tetrapyrrole biosynthesis in higher plants. Annu. Rev. Plant Biol. 58: 321–346.

Xiong, J., Fisher, W., Inoue, K., Nakahara, M., and Bauer, C. E. (2000) Molecular evidence for the early evolution of photosynthesis. Science 289: 1724–1730.

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